Title | Whole exome sequencing analysis in severe chronic obstructive pulmonary disease. |
Publication Type | Journal Article |
Year of Publication | 2018 |
Authors | Qiao, D, Ameli, A, Prokopenko, D, Chen, H, Kho, AT, Parker, MM, Morrow, J, Hobbs, BD, Liu, Y, Beaty, TH, Crapo, JD, Barnes, KC, Nickerson, DA, Bamshad, M, Hersh, CP, Lomas, DA, Agusti, A, Make, BJ, Calverley, PMA, Donner, CF, Wouters, EF, Vestbo, J, Paré, PD, Levy, RD, Rennard, SI, Tal-Singer, R, Spitz, MR, Sharma, A, Ruczinski, I, Lange, C, Silverman, EK, Cho, MH |
Journal | Hum Mol Genet |
Volume | 27 |
Issue | 21 |
Pagination | 3801-3812 |
Date Published | 2018 11 01 |
ISSN | 1460-2083 |
Keywords | Adolescent, Adult, Aged, Case-Control Studies, DNA Mutational Analysis, Female, Genetic Association Studies, Genetic Predisposition to Disease, Humans, Male, Middle Aged, Mutation, Polymorphism, Single Nucleotide, Pulmonary Disease, Chronic Obstructive, Whole Exome Sequencing, Young Adult |
Abstract | Chronic obstructive pulmonary disease (COPD), one of the leading causes of death worldwide, is substantially influenced by genetic factors. Alpha-1 antitrypsin deficiency demonstrates that rare coding variants of large effect can influence COPD susceptibility. To identify additional rare coding variants in patients with severe COPD, we conducted whole exome sequencing analysis in 2543 subjects from two family-based studies (Boston Early-Onset COPD Study and International COPD Genetics Network) and one case-control study (COPDGene). Applying a gene-based segregation test in the family-based data, we identified significant segregation of rare loss of function variants in TBC1D10A and RFPL1 (P-value |
DOI | 10.1093/hmg/ddy269 |
Alternate Journal | Hum. Mol. Genet. |
PubMed ID | 30060175 |
PubMed Central ID | PMC6196654 |
Grant List | U54 HG006493 / HG / NHGRI NIH HHS / United States P01 HL105339 / HL / NHLBI NIH HHS / United States R01 HL089856 / HL / NHLBI NIH HHS / United States K07 CA181480 / CA / NCI NIH HHS / United States K01 HL129039 / HL / NHLBI NIH HHS / United States UM1 HG006493 / HG / NHGRI NIH HHS / United States R01 HL113264 / HL / NHLBI NIH HHS / United States K25 HL136846 / HL / NHLBI NIH HHS / United States R01 HL089897 / HL / NHLBI NIH HHS / United States |