Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.

TitleExome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.
Publication TypeJournal Article
Year of Publication2015
AuthorsStuart, BD, Choi, J, Zaidi, S, Xing, C, Holohan, B, Chen, R, Choi, M, Dharwadkar, P, Torres, F, Girod, CE, Weissler, J, Fitzgerald, J, Kershaw, C, Klesney-Tait, J, Mageto, Y, Shay, JW, Ji, W, Bilguvar, K, Mane, S, Lifton, RP, Garcia, CKim
JournalNat Genet
Volume47
Issue5
Pagination512-7
Date Published2015 May
ISSN1546-1718
KeywordsAdult, Aged, Aged, 80 and over, Amino Acid Sequence, Case-Control Studies, Cells, Cultured, DNA Helicases, DNA Mutational Analysis, Exome, Exoribonucleases, Female, Genetic Association Studies, Genetic Predisposition to Disease, Humans, Idiopathic Pulmonary Fibrosis, Leukocytes, Lod Score, Male, Middle Aged, Molecular Sequence Data, Pedigree, Telomere, Telomere Shortening
Abstract

Idiopathic pulmonary fibrosis (IPF) is an age-related disease featuring progressive lung scarring. To elucidate the molecular basis of IPF, we performed exome sequencing of familial kindreds with pulmonary fibrosis. Gene burden analysis comparing 78 European cases and 2,816 controls implicated PARN, an exoribonuclease with no previous connection to telomere biology or disease, with five new heterozygous damaging mutations in unrelated cases and none in controls (P = 1.3 × 10(-8)); mutations were shared by all affected relatives (odds in favor of linkage = 4,096:1). RTEL1, an established locus for dyskeratosis congenita, harbored significantly more new damaging and missense variants at conserved residues in cases than in controls (P = 1.6 × 10(-6)). PARN and RTEL1 mutation carriers had shortened leukocyte telomere lengths, and we observed epigenetic inheritance of short telomeres in family members. Together, these genes explain ~7% of familial pulmonary fibrosis and strengthen the link between lung fibrosis and telomere dysfunction.

DOI10.1038/ng.3278
Alternate JournalNat. Genet.
PubMed ID25848748
PubMed Central IDPMC4414891
Grant ListUL1 TR001105 / TR / NCATS NIH HHS / United States
P30 ES005605 / ES / NIEHS NIH HHS / United States
R01 HL093096 / HL / NHLBI NIH HHS / United States
U54HG006504 / HG / NHGRI NIH HHS / United States
U54 HG006504 / HG / NHGRI NIH HHS / United States
R01HL093096 / HL / NHLBI NIH HHS / United States
K12HD068369 / HD / NICHD NIH HHS / United States
UL1TR001105 / TR / NCATS NIH HHS / United States
T32 GM007205 / GM / NIGMS NIH HHS / United States
/ / Howard Hughes Medical Institute / United States
P30 DK054759 / DK / NIDDK NIH HHS / United States
P30 CA016359 / CA / NCI NIH HHS / United States
K12 HD068369 / HD / NICHD NIH HHS / United States