Whole exome sequencing analysis in severe chronic obstructive pulmonary disease.

TitleWhole exome sequencing analysis in severe chronic obstructive pulmonary disease.
Publication TypeJournal Article
Year of Publication2018
AuthorsQiao, D, Ameli, A, Prokopenko, D, Chen, H, Kho, AT, Parker, MM, Morrow, J, Hobbs, BD, Liu, Y, Beaty, TH, Crapo, JD, Barnes, KC, Nickerson, DA, Bamshad, M, Hersh, CP, Lomas, DA, Agusti, A, Make, BJ, Calverley, PMA, Donner, CF, Wouters, EF, Vestbo, J, Paré, PD, Levy, RD, Rennard, SI, Tal-Singer, R, Spitz, MR, Sharma, A, Ruczinski, I, Lange, C, Silverman, EK, Cho, MH
JournalHum Mol Genet
Volume27
Issue21
Pagination3801-3812
Date Published2018 11 01
ISSN1460-2083
KeywordsAdolescent, Adult, Aged, Case-Control Studies, DNA Mutational Analysis, Female, Genetic Association Studies, Genetic Predisposition to Disease, Humans, Male, Middle Aged, Mutation, Polymorphism, Single Nucleotide, Pulmonary Disease, Chronic Obstructive, Whole Exome Sequencing, Young Adult
Abstract

Chronic obstructive pulmonary disease (COPD), one of the leading causes of death worldwide, is substantially influenced by genetic factors. Alpha-1 antitrypsin deficiency demonstrates that rare coding variants of large effect can influence COPD susceptibility. To identify additional rare coding variants in patients with severe COPD, we conducted whole exome sequencing analysis in 2543 subjects from two family-based studies (Boston Early-Onset COPD Study and International COPD Genetics Network) and one case-control study (COPDGene). Applying a gene-based segregation test in the family-based data, we identified significant segregation of rare loss of function variants in TBC1D10A and RFPL1 (P-value 

DOI10.1093/hmg/ddy269
Alternate JournalHum. Mol. Genet.
PubMed ID30060175
PubMed Central IDPMC6196654
Grant ListU54 HG006493 / HG / NHGRI NIH HHS / United States
P01 HL105339 / HL / NHLBI NIH HHS / United States
R01 HL089856 / HL / NHLBI NIH HHS / United States
K07 CA181480 / CA / NCI NIH HHS / United States
K01 HL129039 / HL / NHLBI NIH HHS / United States
UM1 HG006493 / HG / NHGRI NIH HHS / United States
R01 HL113264 / HL / NHLBI NIH HHS / United States
K25 HL136846 / HL / NHLBI NIH HHS / United States
R01 HL089897 / HL / NHLBI NIH HHS / United States